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Know
Start with a name, a type, or a body system. The graph holds 116,096 more entities beyond the ones listed here.
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How to read the figure
What is drawn
117,704 entities in the graph, including 4,318 compounds. 139 compounds have findings and 2,334 have a transporter route; 798 are drawn here, counting the compounds their findings and routes reach (a further 1,634 routed compounds are listed on their own pages). Common metabolites such as ATP and water are left out.
How the layout works
Compounds and endpoints with findings sit in the middle. What they connect to forms the next ring, and the wider reference data lies outside it. Zoomed out, the outer ring is shaded, not drawn line by line: a darker patch has more connections, not stronger ones.
Size
Every node is drawn at the same size. Size and brightness never stand for a quantity. The number of connections a node has is listed under Entities.
Selection
Selecting a node highlights its neighbourhood. Its direct connections light up in the accent colour and the rest of the graph fades. Each step further out is lit a little less.
Shape and colour show the type
1,608 entities, 3,804 connections
Filters
OutcomeHamilton Depression Rating Scale (HDRS) total scoreCAT:outcome/hdrs-total-score
Selected in the figure.
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Drag to rotate · shift-drag to pan · scroll to zoom · click a node to select it · click a line to read it/ search · ↑↓ move through the list · Enter select · e one more ring · f fit to view · +− zoom · Esc clear
/ search↑ ↓ move through the listEnter selecte one more ringf fit to view+ − zoomEsc cleardrag to rotate shift-drag to pan scroll to zoom click a node to select it click a line to read it
Line weight and dash show the evidence strength
Line style shows the kind of link
A broken line means no source reports the connection directly. Co-mentions are off by default; turn them on under Filters.
Line weight and dash show the evidence strength
Line style shows the kind of link
A broken line means no source reports the connection directly. Co-mentions are off by default; turn them on under Filters.