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Proteins/UNIPROT:O60341
Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2). May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. Also acts as a coactivator of androgen receptor (AR)-dependent transcription, by being recruited to AR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression. The presence of PRKCB in AR-containing complexes, which mediates phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag that prevents demethylation H3K4me, prevents H3K4me demethylase activity of KDM1A. Demethylates di-methylated 'Lys-370' of p53/TP53 which prevents interaction of p53/TP53 with TP53BP1 and represses p53/TP53-mediated transcriptional activation. Demethylates and stabilizes the DNA methylase DNMT1. Demethylates methylated 'Lys-42' and methylated 'Lys-117' of SOX2. Required for gastrulation during embryogenesis. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Facilitates epithelial-to-mesenchymal transition by acting as an effector of SNAI1-mediated transcription repression of epithelial markers E-cadherin/CDH1, CDN7 and KRT8. Required for the maintenance of the silenced state of the SNAI1 target genes E-cadherin/CDH1 and CDN7. Required for the repression of GIPR expression..
[Isoform 2]: Neuron-specific histone demethylase that demethylates mono- and dimethylated 'Lys-20' of histone H4 (H4K20me1 and H4K20me2), a chromatin repressive mark. This demethylation is crucial for the initiation and elongation of neuronal activity-regulated genes, required for spatial learning and memory (By similarity). Mediates H3K9me2 demethylation through cooperation with the supervillin protein (SVIL), and this H3K9 demethylase activity is essential for regulating gene expression during neuronal differentiation..
[Isoform 4]: Neuron-specific histone demethylase that demethylates mono- and dimethylated 'Lys-20' of histone H4 (H4K20me1 and H4K20me2), a chromatin repressive mark. This demethylation is crucial for the initiation and elongation of neuronal activity-regulated genes, required for spatial learning and memory (By similarity). Mediates H3K9me2 demethylation through cooperation with the supervillin protein (SVIL), and this H3K9 demethylase activity is essential for regulating gene expression during neuronal differentiation..
Function from UniProtKB (O60341), read 2026-09-23. CC BY 4.0.
Curated compounds routed: 0
1 row
207 statements
207 statements · 8 reference databases · Subject: KDM1A · Sources: Bgee, gene ontology, Hetionet, Human Protein Atlas, Reactome, Rhea, UniProt, WikiPathways
8 reactions
N(6),N(6)-dimethyl-L-lysyl(9)-[histone H3]+22-oxoglutarate(2-)+2dioxygenL-lysyl(9)-[histone H3]+2formaldehyde+2succinate(2-)+2carbon dioxide
Catalysed by HR or KDM1A or KDM7A or KDM3B or PHF8 or KDM3A
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:60188CC BY 4.0Reference data
8 names
Resolves to: KDM1A
N(6),N(6)-dimethyl-L-lysyl(9)-[histone H3]+2-oxoglutarate(2-)+dioxygenN(6)-methyl-L-lysyl(9)-[histone H3]+formaldehyde+succinate(2-)+carbon dioxide
Catalysed by KDM4E or KDM1A or PHF2 or PHF8
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:60192CC BY 4.0Reference data
N(6)-methyl-L-lysyl(9)-[histone H3]+2-oxoglutarate(2-)+dioxygenL-lysyl(9)-[histone H3]+formaldehyde+succinate(2-)+carbon dioxide
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:60196CC BY 4.0Reference data
N(6),N(6)-dimethyl-L-lysyl(4)-[histone H3]+2A+2waterL-lysyl(4)-[histone H3]+2formaldehyde+2AH2
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:60244CC BY 4.0Reference data
N(6),N(6)-dimethyl-L-lysyl(4)-[histone H3]+A+waterN(6)-methyl-L-lysyl(4)-[histone H3]+formaldehyde+AH2
Catalysed by KDM1A
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:60248CC BY 4.0Reference data
N(6)-methyl-L-lysyl(4)-[histone H3]+A+waterL-lysyl(4)-[histone H3]+formaldehyde+AH2
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:60256CC BY 4.0Reference data
N(6)-methyl-L-lysyl(20)-[histone H4]+2-oxoglutarate(2-)+dioxygenL-lysyl(20)-[histone H4]+formaldehyde+succinate(2-)+carbon dioxide
Catalysed by KDM1A or RAD23A or RAD23B or KDM7A or PHF8
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:67804CC BY 4.0Reference data
N(6),N(6)-dimethyl-L-lysyl(20)-[histone H4]+2-oxoglutarate(2-)+dioxygenN(6)-methyl-L-lysyl(20)-[histone H4]+formaldehyde+succinate(2-)+carbon dioxide
Catalysed by KDM1A or RAD23A or RAD23B or RSBN1
Reaction pageLeft to rightBalance undeterminable
Rhea RHEA:85907CC BY 4.0Reference data