Compound
isopentenyl diphosphate
An organophosphate oxoanion that is the trianion of isopentenyl diphosphate arising from deprotonation of the three OH groups of the diphosphate.
Definition from ChEBI (CHEBI:128769), read 2026-09-23. CC BY 4.0.
Structure
Loading the model…
- Class
- Organic compound, anion
- Formula
- C5H9O7P2
- Mass
- 243.068 g/mol
- Charge
- -3
- InChIKey
- NUHSROFQTUXZQQ-UHFFFAOYSA-K
- SMILES
- C=C(C)CCOP(=O)([O-])OP(=O)([O-])[O-]
- Look it up
- ChEBIPubChemBy InChIKey
Identity from ChEBI, geometry from PubChem. Not evidence.
What it touches on the way
Mechanistic reach
11 entities
11 entities reached.
0 reported hops11 assembled from the scaffold
- FDPSProteinUNIPROT:P14324substrate ofInferred only137 paths23 endpoints
- GGPS1ProteinUNIPROT:O95749substrate ofInferred only60 paths10 endpoints
- IDI1ProteinUNIPROT:Q13907substrate ofInferred only54 paths18 endpoints
- DHDDSProteinUNIPROT:Q86SQ9substrate ofInferred only33 paths11 endpoints
- MVDProteinUNIPROT:P53602substrate ofInferred only27 paths27 endpoints
- IDI2ProteinUNIPROT:Q9BXS1substrate ofInferred only21 paths7 endpoints
- PDSS2ProteinUNIPROT:Q86YH6substrate ofInferred only18 paths6 endpoints
- PDSS1ProteinUNIPROT:Q5T2R2substrate ofInferred only15 paths5 endpoints
- NUS1ProteinUNIPROT:Q96E22substrate ofInferred only11 paths11 endpoints
- NUDT15ProteinUNIPROT:Q9NV35substrate ofInferred only8 paths8 endpoints
- NUDT18ProteinUNIPROT:Q6ZVK8substrate ofInferred only5 paths5 endpoints
What the reference databases state
Statements
31 statements
31 statements · 2 reference databases · Subject: isopentenyl diphosphate · Sources: Human-GEM, Rhea
- isopentenyl diphosphate is a substrate of DHDDSProteinRhea RHEA:53008Inferred only
- isopentenyl diphosphate is a substrate of DHDDSProteinHuman-GEM MAR20098Inferred only
- isopentenyl diphosphate is a substrate of DHDDSProteinHuman-GEM MAR07254Inferred only
- isopentenyl diphosphate is a substrate of FDPSProteinRhea RHEA:19361Inferred only
- isopentenyl diphosphate is a substrate of FDPSProteinHuman-GEM MAR01457Inferred only
- isopentenyl diphosphate is a substrate of FDPSProteinHuman-GEM MAR01460Inferred only
- isopentenyl diphosphate is a substrate of FDPSProteinHuman-GEM MAR01397Inferred only
- isopentenyl diphosphate is a substrate of FDPSProteinRhea RHEA:22408Inferred only
- isopentenyl diphosphate is a substrate of FDPSProteinHuman-GEM MAR00285Inferred only
- isopentenyl diphosphate is a substrate of GGPS1ProteinRhea RHEA:17653Inferred only
- isopentenyl diphosphate is a substrate of GGPS1ProteinRhea RHEA:22408Inferred only
- isopentenyl diphosphate is a substrate of GGPS1ProteinHuman-GEM MAR01457Inferred only
Show the remaining 19
- isopentenyl diphosphate is a substrate of GGPS1ProteinHuman-GEM MAR01460Inferred only
- isopentenyl diphosphate is a substrate of GGPS1ProteinHuman-GEM MAR11408Inferred only
- isopentenyl diphosphate is a substrate of GGPS1ProteinRhea RHEA:19361Inferred only
- isopentenyl diphosphate is a substrate of IDI1ProteinHuman-GEM MAR01454Inferred only
- isopentenyl diphosphate is a substrate of IDI1ProteinHuman-GEM MAR01468Inferred only
- isopentenyl diphosphate is a substrate of IDI1ProteinRhea RHEA:23284Inferred only
- isopentenyl diphosphate is a substrate of IDI2ProteinHuman-GEM MAR01468Inferred only
- isopentenyl diphosphate is a substrate of IDI2ProteinHuman-GEM MAR01454Inferred only
- isopentenyl diphosphate is a substrate of IDI2ProteinRhea RHEA:23284Inferred only
- isopentenyl diphosphate is a substrate of MVDProteinRhea RHEA:23732Inferred only
- isopentenyl diphosphate is a substrate of NUDT15ProteinRhea RHEA:70503Inferred only
- isopentenyl diphosphate is a substrate of NUDT18ProteinRhea RHEA:70503Inferred only
- isopentenyl diphosphate is a substrate of NUS1ProteinRhea RHEA:53008Inferred only
- isopentenyl diphosphate is a substrate of PDSS1ProteinRhea RHEA:27802Inferred only
- isopentenyl diphosphate is a substrate of PDSS1ProteinHuman-GEM MAR06901Inferred only
- isopentenyl diphosphate is a substrate of PDSS1ProteinRhea RHEA:55364Inferred only
- isopentenyl diphosphate is a substrate of PDSS2ProteinRhea RHEA:27802Inferred only
- isopentenyl diphosphate is a substrate of PDSS2ProteinRhea RHEA:55364Inferred only
- isopentenyl diphosphate is a substrate of PDSS2ProteinHuman-GEM MAR06901Inferred only
Reactions
53 reactions
MAM01706x+isopentenyl diphosphate(2E)-geranyl diphosphate+diphosphate(3-)
Catalysed by FDPS
Reaction pageLeft to rightBalancedEC 2.5.1.1peroxisome
Human-GEM MAR00285CC BY 4.0Reference data
MAM00164x+ATPADP+carbon dioxide+isopentenyl diphosphate+phosphate(3-)
Catalysed by MVD
Reaction pageLeft to rightBalancedEC 4.1.1.33peroxisome
Human-GEM MAR00441CC BY 4.0Reference data
(2E)-geranyl diphosphate+isopentenyl diphosphate(2E,6E)-farnesyl diphosphate+diphosphate(3-)
Catalysed by FDPS
Reaction pageLeft to rightBalancedEC 2.5.1.10peroxisome
Human-GEM MAR01397CC BY 4.0Reference data
MAM00164c+ATPADP+carbon dioxide+isopentenyl diphosphate+phosphate(3-)
Catalysed by MVD
Reaction pageLeft to rightBalancedEC 4.1.1.33cytosol
Human-GEM MAR01451CC BY 4.0Reference data
isopentenyl diphosphateMAM01706c
Reaction pageLeft to rightBalancedEC 5.3.3.2cytosol
Human-GEM MAR01454CC BY 4.0Reference data
MAM01706c+isopentenyl diphosphate(2E)-geranyl diphosphate+diphosphate(3-)
Reaction pageLeft to rightBalancedEC 2.5.1.1, 2.5.1.10, 2.5.1.29cytosol
Human-GEM MAR01457CC BY 4.0Reference data
(2E)-geranyl diphosphate+isopentenyl diphosphate(2E,6E)-farnesyl diphosphate+diphosphate(3-)
Reaction pageLeft to rightBalancedEC 2.5.1.1, 2.5.1.10, 2.5.1.29cytosol
Human-GEM MAR01460CC BY 4.0Reference data
isopentenyl diphosphateMAM01706x
Reaction pageReversibleBalancedEC 5.3.3.2peroxisome
Human-GEM MAR01468CC BY 4.0Reference data
isopentenyl diphosphateisopentenyl diphosphate
Reaction pageReversibleBalancedEC 5.3.3.2endoplasmic reticulum, cytosol
Human-GEM MAR01469CC BY 4.0Reference data
isopentenyl diphosphateisopentenyl diphosphate
Reaction pageReversibleBalancedcytosol, peroxisome
Human-GEM MAR03948CC BY 4.0Reference data
(2E,6E)-farnesyl diphosphate+7isopentenyl diphosphateall-trans-decaprenyl diphosphate+7diphosphate(3-)
Reaction pageLeft to rightBalancedEC 2.5.1.91cytosol
Human-GEM MAR06901CC BY 4.0Reference data
16isopentenyl diphosphate+MAM03026cMAM01657c+16diphosphate(3-)
Catalysed by DHDDS
Reaction pageLeft to rightBalancedEC 2.5.1.87cytosol
Human-GEM MAR07254CC BY 4.0Reference data
Other names
5 names
Resolves to: isopentenyl diphosphate
- Also called
- 3-methylbut-3-enyl diphosphate3-methylbut-3-enyl diphosphate trianion3-methylbut-3-enyl pyrophosphateisopentenyl pyrophosphate
- Systematic name
- 3-methylbut-3-en-1-yl diphosphate