Compound

dGDP

A 2'-deoxyribonucleoside 5'-diphosphate obtained by deprotonation of the diphosphate OH groups of dGDP.

Definition from ChEBI (CHEBI:58595), read 2026-09-23. CC BY 4.0.

CHEBI:58595ChEBI

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Structure

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A generated conformer of dGDP — one low-energy arrangement PubChem computed, not a measured structure. Hydrogens are not drawn; the formula counts them.

Class: Organic compound, anion
Formula: C10H12N5O10P2
Mass: 424.179 g/mol
Charge: -3
InChIKey: CIKGWCTVFSRMJU-KVQBGUIXSA-K
SMILES: Nc1nc(=O)c2ncn([C@H]3C[C@H](O)[C@@H](COP(=O)([O-])OP(=O)([O-])[O-])O3)c2n1
Look it up: ChEBI PubChem By InChIKey

Identity from ChEBI, geometry from PubChem. Not evidence.

What it touches on the way

Mechanistic reach

5 entities

5 entities reached.

0 reported hops5 assembled from the scaffold

What the reference databases state

Statements

14 statements

14 statements · 1 reference database · Subject: dGDP · Sources: Rhea

Order

dGMP is converted to dGDPCompoundRhea RHEA:12697Inferred only
dGDP is converted to dGMPCompoundRhea RHEA:62136Inferred only
dGDP is converted to dGMPCompoundRhea RHEA:12697Inferred only
dGDP is converted to dGMPCompoundRhea RHEA:64940Inferred only
dGMP is converted to dGDPCompoundRhea RHEA:62136Inferred only
dGTP is converted to dGDPCompoundRhea RHEA:64936Inferred only
dGDP is converted to dGTPCompoundRhea RHEA:27690Inferred only
dGDP is converted to dGTPCompoundRhea RHEA:64936Inferred only
dGDP is a substrate of AK1ProteinRhea RHEA:27690Inferred only
dGDP is a substrate of AK4ProteinRhea RHEA:27690Inferred only
dGDP is a substrate of AK9ProteinRhea RHEA:27690Inferred only
dGDP is a substrate of NME4ProteinRhea RHEA:27690Inferred only

Show the remaining 2

dGDP is a substrate of NUDT5ProteinRhea RHEA:64940Inferred only
dGDP is transported by SLC25A33ProteinRhea RHEA:73563Inferred only

Reactions

13 reactions

dGMP+ATP(4-)dGDP+ADP(3-)
Reaction pageDirection not assertedBalanced
Rhea RHEA:12697CC BY 4.0Reference data
dGDP+ATP(4-)dGTP+ADP(3-)
Catalysed by NME4 or AK1 or AK4 or AK9
Reaction pageLeft to rightBalanced
Rhea RHEA:27690CC BY 4.0Reference data
dGDP+[thioredoxin]-disulfide+water[thioredoxin]-dithiol+GDP
Reaction pageDirection not assertedBalance undeterminable
Rhea RHEA:28030CC BY 4.0Reference data
dGTP+pyruvatedGDP+phosphoenolpyruvate+hydron
Reaction pageDirection not assertedBalanced
Rhea RHEA:30791CC BY 4.0Reference data
dGTP+adenosinedGDP+AMP+hydron
Reaction pageDirection not assertedBalanced
Rhea RHEA:52536CC BY 4.0Reference data
CHEBI:65317+dGTPCHEBI:73316+dGDP
Reaction pageDirection not assertedBalance undeterminable
Rhea RHEA:62128CC BY 4.0Reference data
dGMP+GTPdGDP+GDP
Reaction pageDirection not assertedBalanced
Rhea RHEA:62136CC BY 4.0Reference data
dGMP+dGTP2dGDP
Reaction pageDirection not assertedBalanced
Rhea RHEA:62144CC BY 4.0Reference data
dTMP+dGTPdGDP+dTDP
Reaction pageDirection not assertedBalanced
Rhea RHEA:62148CC BY 4.0Reference data
dTTP+dGMPdGDP+dTDP
Reaction pageDirection not assertedBalanced
Rhea RHEA:62152CC BY 4.0Reference data
dGTP+waterdGDP+hydrogenphosphate+hydron
Reaction pageDirection not assertedBalanced
Rhea RHEA:64936CC BY 4.0Reference data
dGDP+waterdGMP+hydrogenphosphate+hydron
Catalysed by NUDT5
Reaction pageLeft to rightBalanced
Rhea RHEA:64940CC BY 4.0Reference data

Show the remaining 1

Other names

1 name

Resolves to: dGDP

Also called: 2'-deoxyguanosine 5'-diphosphate