Pathway
Positive epigenetic regulation of rRNA expression
Transcription of rRNA genes is controlled by epigenetic activation and repression according to the metabolic requirements of the cell (reviewed in Percipalle and Farrants 2006, McStay and Grummt 2008, Goodfellow and Zomerdijk 2012, Grummt and Langst 2013). Depending on the growth state of the cell, about half of the approximately 400 rRNA genes are expressed and these have the modifications characteristic of active chromatin: unmethylated DNA and acetylated histones. Repressed genes generally have methylated DNA and histone H3 methylated at lysine-9. Regulators of activation include ERCC6 (CSB), histone acetylases such as KAT2B (PCAF), and the B-WICH complex. Dysregulation of RNA polymerase I transcription plays a role in disease (reviewed in Hannan et al. 2013).
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The B-WICH complex positively regulates rRNA expression by remodeling chromatin and recruiting histone acetyltransferases that modify histones to transcriptionally active states
ERCC6 (CSB) and EHMT2(G9a) positively regulate rRNA expression by ERCC6 recruiting the histone methyltransferase EHMT2 (also known as G9a) which dimethylates histone H3 at lysine-9 within the transcribed regions of rRNA genes.
ERCC6 (CSB) and KAT2B (PCAF) positively regulate rRNA expression by ERCC6 recruiting the histone acetyltransferase KAT2B to the promoter where KAT2B acetylates histone H4 at several lysine residues and histone H3 at lysine-9. The acetylated chromatin facilitates the assembly of RNA polymerase I initiation complex.
What the reference databases state
Statements
70 statements
70 statements · 1 reference database · Subject: Positive epigenetic regulation of rRNA expression · Sources: Reactome
- ACTB participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- BAZ1B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- CBX3 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- CHD3 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- CHD4 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- DDX21 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- DEK participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- EHMT2 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- EP300 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- ERCC6 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- GATAD2A participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- GATAD2B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
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- GSK3B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AB1 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AC14 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AC18; H2AC19 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AC20 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AC4; H2AC8 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AC6 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AC7 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AJ participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AX participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2AZ2 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC1 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC11 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC12 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC13 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC14 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC15 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC17 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC21 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC26 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC3 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC4; H2BC6; H2BC7; H2BC8; H2BC10 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H2BC9 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H3-3A; H3-3B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8; H3C10; H3C11; H3C12 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H3C15; H3C14; H3C13 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9; H4C11; H4C12; H4C13; H4C14; H4C15; H4C16 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- HDAC1 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- HDAC2 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- KAT2A participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- KAT2B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- MBD3 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- MTA1 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- MTA2 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- MTA3 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- MYBBP1A participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1A participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1C participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1E participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1F participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1G participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR1H participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR2E participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR2F participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR2H participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR2K participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- POLR2L participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- RBBP4 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- RBBP7 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- SF3B1 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- SMARCA5 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- TAF1A participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- TAF1B participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- TAF1C participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- TAF1D participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- TBP participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only
- TTF1 participates in Positive epigenetic regulation of rRNA expressionProteinReactome R-HSA-5250913Inferred only