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Reference

Evidence

CompoundsSubstances with curated findings
OutcomesMeasured endpoints
ProteinsTransporters and enzymes
InteractionsPairs that share biology
PapersEvery paper a finding cites
ArticlesReadings of the evidence

Chemistry

ReactionsRhea and Human-GEM, by subsystem
ReachWhat a compound can become

Reference layer

PathwaysReactions grouped under one name
ProcessesWhat proteins are annotated as doing
AnatomyTissues, by what is expressed there
Cell typesCells, by what is expressed there
OrganismsSpecies a compound is prepared from
MaterialsSubstances that are not one molecule
AssessmentsRegulatory determinations, transcribed
DiseasesFeatures, genes, and where each sits

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Reference

Evidence

Compounds
Outcomes
Proteins
Interactions
Papers
Articles

Chemistry

Reactions
Reach

Reference layer

Pathways
Processes
Anatomy
Cell types
Organisms
Materials
Assessments
Diseases

Atlas Graph Twin Access

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Catalyst

Computational infrastructure for human biology, built on a provenance-aware knowledge graph. Findings retain their sources; research and simulation are the next layers.

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A reference for what the literature reports. Not medical advice.

© 2026 CatalystPrivacy TermsReference data under the licences listed on the attribution page.

Compound

a 2'-deoxyribonucleoside 5'-diphosphate

CHEBI:73316ChEBI

Open in the graph

What it touches on the way

Inferred

Not reported; assembled from reference reactions.

Mechanistic reach

12 entities

12 entities reached.

0 reported hops12 assembled from the scaffold

NME1ProteinUNIPROT:P15531substrate ofInferred only32 paths32 endpoints
NME2ProteinUNIPROT:P22392substrate ofInferred only26 paths26 endpoints
AK1ProteinUNIPROT:P00568substrate ofInferred only12 paths12 endpoints
NME4ProteinUNIPROT:O00746substrate ofInferred only10 paths10 endpoints
AK4ProteinUNIPROT:P27144substrate ofInferred only8 paths8 endpoints
NME3ProteinUNIPROT:Q13232substrate ofInferred only8 paths8 endpoints
AK5ProteinUNIPROT:Q9Y6K8substrate ofInferred only8 paths8 endpoints
NME6ProteinUNIPROT:O75414substrate ofInferred only6 paths6 endpoints
CMPK1ProteinUNIPROT:P30085substrate ofInferred only4 paths4 endpoints
AK7ProteinUNIPROT:Q96M32substrate ofInferred only4 paths4 endpoints
AK8ProteinUNIPROT:Q96MA6substrate ofInferred only4 paths4 endpoints
CMPK2ProteinUNIPROT:Q5EBM0substrate ofInferred only1 path1 endpoint