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Reference

Evidence

CompoundsSubstances with curated findings
OutcomesMeasured endpoints
ProteinsTransporters and enzymes
InteractionsPairs that share biology
PapersEvery paper a finding cites
ArticlesReadings of the evidence

Chemistry

ReactionsRhea and Human-GEM, by subsystem
ReachWhat a compound can become

Reference layer

PathwaysReactions grouped under one name
ProcessesWhat proteins are annotated as doing
AnatomyTissues, by what is expressed there
Cell typesCells, by what is expressed there
OrganismsSpecies a compound is prepared from
MaterialsSubstances that are not one molecule
AssessmentsRegulatory determinations, transcribed
DiseasesFeatures, genes, and where each sits

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Reference

Evidence

Compounds
Outcomes
Proteins
Interactions
Papers
Articles

Chemistry

Reactions
Reach

Reference layer

Pathways
Processes
Anatomy
Cell types
Organisms
Materials
Assessments
Diseases

Atlas Graph Twin Access

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Computational infrastructure for human biology, built on a provenance-aware knowledge graph. Findings retain their sources; research and simulation are the next layers.

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A reference for what the literature reports. Not medical advice.

© 2026 CatalystPrivacy TermsReference data under the licences listed on the attribution page.

Index

Pathways

Names from Reactome and WikiPathways

pathways in the graph: 3,812

Filter pathways by name

#a b c d e f g h i j k l m n o p q r s t u v w x y z

275 of 3,812 begin with A

Apoptosis related network due to altered Notch3 in ovarian cancerWikiPathways2864
Apoptotic cleavage of cell adhesion proteinsReactomeR-HSA-351906
Apoptotic cleavage of cellular proteinsReactomeR-HSA-111465
Apoptotic execution phaseReactomeR-HSA-75153
Apoptotic factor-mediated responseReactomeR-HSA-111471

More of the reference layer

Biological processes
Anatomy
Cell types
Organisms
Materials
Regulatory assessments
Diseases

Evidence: Compounds · Outcomes · Papers · Search

Aquaporin-mediated transport

ReactomeR-HSA-445717

Arachidonate epoxygenase epoxide hydrolaseWikiPathways678

Arachidonate metabolismReactomeR-HSA-2142753

Arachidonate production from DAGReactomeR-HSA-426048

Arachidonic acid AA ARA oxylipin metabolismWikiPathways5155

ARG1 variants cause hyperargininemiaReactomeR-HSA-9956514

Aripiprazole metabolic pathwayWikiPathways2640

ARL13B-mediated ciliary trafficking of INPP5EReactomeR-HSA-5624958

ARMS-mediated activationReactomeR-HSA-170984

Aromatic amines can be N-hydroxylated or N-dealkylated by CYP1A2ReactomeR-HSA-211957

Arrhythmogenic right ventricular cardiomyopathyWikiPathways2118

Arsenic metabolism and reactive oxygen species generationWikiPathways5233

Artemisinin inhibition of uveal melanomaWikiPathways5441

Aryl hydrocarbon receptor pathwayWikiPathways2873

Aryl hydrocarbon receptor response to main mediators PAH and TCDDWikiPathways2586

Aryl hydrocarbon receptor signallingReactomeR-HSA-8937144

Arylamine metabolismWikiPathways694

ASL variants cause argininosuccinate aciduriaReactomeR-HSA-9956529

ASP-3026-resistant ALK mutantsReactomeR-HSA-9717264

Asparagine N-linked glycosylationReactomeR-HSA-446203

Aspartate and asparagine metabolismReactomeR-HSA-8963693

Aspirin ADMEReactomeR-HSA-9749641

Aspirin and miRNAsWikiPathways4707

Aspirin prevention of cancer metastasisWikiPathways5518

ASS1 variants cause citrullinemiaReactomeR-HSA-9956520

Assembly and cell surface presentation of NMDA receptorsReactomeR-HSA-9609736

Assembly and Release of Dengue Virus VirionsReactomeR-HSA-9918476

Assembly and release of respiratory syncytial virus (RSV) virionsReactomeR-HSA-9820962

Assembly of active LPL and LIPC lipase complexesReactomeR-HSA-8963889

Assembly of collagen fibrils and other multimeric structuresReactomeR-HSA-2022090

Assembly of the 9+0 primary ciliumReactomeR-HSA-9975921

Assembly of the 9+2 motile ciliaReactomeR-HSA-9975924

Assembly Of The HIV VirionReactomeR-HSA-175474

Assembly of the ORC complex at the origin of replicationReactomeR-HSA-68616

Assembly of the pre-replicative complexReactomeR-HSA-68867

Assembly of Viral Components at the Budding SiteReactomeR-HSA-168316

Association of TriC/CCT with target proteins during biosynthesisReactomeR-HSA-390471

Astrocytic Glutamate-Glutamine Uptake And MetabolismReactomeR-HSA-210455

Asymmetric localization of PCP proteinsReactomeR-HSA-4608870

ATF4 activates genes in response to endoplasmic reticulum stressReactomeR-HSA-380994

ATF6 (ATF6-alpha) activates chaperone genesReactomeR-HSA-381183

ATF6 (ATF6-alpha) activates chaperonesReactomeR-HSA-381033

ATF6B (ATF6-beta) activates chaperonesReactomeR-HSA-8874177

ATM signalingWikiPathways2516

ATM signaling in development and disease WikiPathways3878

Atopic dermatitis mechanism and therapiesWikiPathways5538

Atorvastatin ADMEReactomeR-HSA-9754706

ATP sensitive Potassium channelsReactomeR-HSA-1296025

ATP-dependent chromatin remodelersReactomeR-HSA-9932444

ATR signalingWikiPathways3875

Attachment and EntryReactomeR-HSA-9678110

Attachment and EntryReactomeR-HSA-9694614

Attachment of bacteria to epithelial cellsReactomeR-HSA-9638630

Attachment of GPI anchor to uPARReactomeR-HSA-162791

Attenuation phaseReactomeR-HSA-3371568

AUF1 (hnRNP D0) binds and destabilizes mRNAReactomeR-HSA-450408

AURKA Activation by TPX2ReactomeR-HSA-8854518

Autodegradation of Cdh1 by Cdh1:APC/CReactomeR-HSA-174084

Autodegradation of the E3 ubiquitin ligase COP1ReactomeR-HSA-349425

Autointegration results in viral DNA circlesReactomeR-HSA-177539

AutophagyReactomeR-HSA-9612973

AutophagyWikiPathways4923

Autophagy in pancreatic ductal adenocarcinomaWikiPathways5331

Autosomal recessive osteopetrosis pathwaysWikiPathways4788

AXIN missense mutants destabilize the destruction complexReactomeR-HSA-5467340

Axon guidanceReactomeR-HSA-422475

Axon guidanceWikiPathways5289

Axonal growth inhibition (RHOA activation)ReactomeR-HSA-193634

Axonal growth stimulationReactomeR-HSA-209563

Azathioprine ADMEReactomeR-HSA-9748787

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