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Reference

Evidence

CompoundsSubstances with curated findings
OutcomesMeasured endpoints
ProteinsTransporters and enzymes
InteractionsPairs that share biology
PapersEvery paper a finding cites
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Chemistry

ReactionsRhea and Human-GEM, by subsystem
ReachWhat a compound can become

Reference layer

PathwaysReactions grouped under one name
ProcessesWhat proteins are annotated as doing
AnatomyTissues, by what is expressed there
Cell typesCells, by what is expressed there
OrganismsSpecies a compound is prepared from
MaterialsSubstances that are not one molecule
AssessmentsRegulatory determinations, transcribed
DiseasesFeatures, genes, and where each sits

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Reference

Evidence

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Outcomes
Proteins
Interactions
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Reactions
Reach

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Cell types
Organisms
Materials
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Diseases

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Catalyst

Computational infrastructure for human biology, built on a provenance-aware knowledge graph. Findings retain their sources; research and simulation are the next layers.

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A reference for what the literature reports. Not medical advice.

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Index

Reactions

Reactions from Rhea and Human-GEM · Reach

reactions in the graph: 31,435

By source

Rhea18,558
Human-GEM12,877

Inferred

Reference data, not a finding. Evidence key

Filter reactions by equationSource

Reactions

29,601–29,650 of 31,435, by identifier

bisucaberin B + ATP = bisucaberin + AMP + diphosphate + H(+)
Direction not assertedBalancedRhea 79299
3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole = hapalindole U
Direction not assertedBalancedRhea 79303
citrate(in) + 3 H(+)(in) = citrate(out) + 3 H(+)(out)
Direction not assertedBalancedTransportRhea 79307
Fe(III)-[cytochrome c](out) = Fe(III)-[cytochrome c](in)
Direction not assertedBalance undeterminableTransportRhea 79311
(20S)-ginsenoside Rc + H2O = L-arabinofuranose + (20S)-ginsenoside Rd
Direction not assertedBalancedRhea 79315
2-phenylethanol + 2 Fe(III)-[cytochrome c] = 2-phenylacetaldehyde + 2 Fe(II)-[cytochrome c] + 2 H(+)
Direction not assertedBalance undeterminableRhea 79319
octan-1-ol + 2 Fe(III)-[cytochrome c] = octanal + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79323

butan-2-ol + 2 Fe(III)-[cytochrome c] = butan-2-one + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79327

hexan-1-ol + 2 Fe(III)-[cytochrome c] = hexanal + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79331

cinnamyl alcohol + 2 Fe(III)-[cytochrome c] = cinnamaldehyde + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79335

an aldehyde + 2 Fe(III)-[cytochrome c] + H2O = a carboxylate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79339

acetaldehyde + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome c] + acetate + 3 H(+)

Direction not assertedBalance undeterminableRhea 79343

butanal + 2 Fe(III)-[cytochrome c] + H2O = butanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79347

hexanal + 2 Fe(III)-[cytochrome c] + H2O = hexanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79351

octanal + 2 Fe(III)-[cytochrome c] + H2O = octanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79355

farnesol + 2 Fe(III)-[cytochrome c] = farnesal + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79359

5-methyltetrahydrosarcinapterin + coenzyme M + 2 Na(+)(in) = 5,6,7,8-tetrahydrosarcinapterin + methyl-coenzyme M + 2 Na(+)(out)

Direction not assertedBalancedTransportRhea 79363

L-alpha-aminoacyl-L-arginine(out) = L-alpha-aminoacyl-L-arginine(in)

Direction not assertedBalance undeterminableTransportRhea 79367

L-arginyl-L-alpha-amino acid(out) = L-arginyl-L-alpha-amino acid(in)

Direction not assertedBalance undeterminableTransportRhea 79371

L-alpha-aminoacyl-L-histidine(out) = L-alpha-aminoacyl-L-histidine(in)

Direction not assertedBalance undeterminableTransportRhea 79375

L-histidyl-L-alpha-amino acid(out) = L-histidyl-L-alpha-amino acid(in)

Direction not assertedBalance undeterminableTransportRhea 79379

L-alpha-aminoacyl-L-lysine(out) = L-alpha-aminoacyl-L-lysine(in)

Direction not assertedBalance undeterminableTransportRhea 79383

L-lysyl-L-alpha-amino acid(out) = L-lysyl-L-alpha-amino acid(in)

Direction not assertedBalance undeterminableTransportRhea 79387

L-arginyl-glycine(out) = L-arginyl-glycine(in)

Direction not assertedBalancedTransportRhea 79391

L-histidyl-glycine(out) = L-histidyl-glycine(in)

Direction not assertedBalancedTransportRhea 79395

L-lysyl-L-alanine(out) = L-lysyl-L-alanine(in)

Direction not assertedBalancedTransportRhea 79399

L-lysyl-L-lysine(out) = L-lysyl-L-lysine(in)

Direction not assertedBalancedTransportRhea 79403

L-lysyl-glycine(out) = L-lysyl-glycine(in)

Direction not assertedBalancedTransportRhea 79407

L-aspartyl-L-lysine(out) = L-aspartyl-L-lysine(in)

Direction not assertedBalancedTransportRhea 79411

L-alanyl-L-lysine(out) = L-alanyl-L-lysine(in)

Direction not assertedBalancedTransportRhea 79415

myo-inositol + NAD(+) = myo-inosose-5 + NADH + H(+)

Direction not assertedBalancedRhea 79419

thiamine + UTP = thiamine diphosphate + UMP + H(+)

Left to rightBalancedRhea 79423

(E)-ferulate + H2O = 3-hydroxy-3-(4-hydroxy-3-methoxyphenyl)propanoate

Direction not assertedBalancedRhea 79427

1-(1Z-octadecenyl)-sn-glycero-3-phosphoethanolamine + 1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine = 1-(1Z-octadecenyl)-2-(5Z,8Z,11Z,14Z- eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine + 1-octadecanoyl-sn-glycero-3-phosphocholine

Left to rightBalancedRhea 79431

a 1-O-(1Z-alkenyl)-sn-glycero-3-phosphoethanolamine + a 1,2-diacyl-sn-glycero-3-phosphocholine = a 1-O-(1Z-alkenyl)-2-acyl-sn-glycero-3-phosphoethanolamine + a 1-acyl-sn-glycero-3-phosphocholine

Direction not assertedBalance undeterminableRhea 79435

3-hydroxy-3-(4-hydroxy-3-methoxyphenyl)propanoate = vanillin + acetate

Direction not assertedBalancedRhea 79439

4-O-beta-D-glucosyl-trans-ferulate + H2O = 3-hydroxy-3-(4-O-beta-D-glucosyl-3-methoxyphenyl)propanoate

Direction not assertedBalancedRhea 79443

3-hydroxy-3-(4-O-beta-D-glucosyl-3-methoxyphenyl)propanoate = 4-O-beta-D-glucosyl-vanillin + acetate

Direction not assertedBalancedRhea 79447

(E)-4-coumarate + H2O = 3-hydroxy-3-(4-hydroxyphenyl)propanoate

Direction not assertedBalancedRhea 79451

3-hydroxy-3-(4-hydroxyphenyl)propanoate = 4-hydroxybenzaldehyde + acetate

Direction not assertedBalancedRhea 79455

(2E,6E,10E)-geranylgeranyl diphosphate = sobralene + diphosphate

Direction not assertedBalancedRhea 79459

(2Z,6E)-farnesyl diphosphate = (Z)-gamma-bisabolene + diphosphate

Direction not assertedBalancedRhea 79463

luteolin + S-adenosyl-L-methionine = diosmetin + S-adenosyl-L-homocysteine + H(+)

Direction not assertedBalancedRhea 79467

citrate(out) + 2 Na(+)(out) = citrate(in) + 2 Na(+)(in)

Direction not assertedBalancedTransportRhea 79471

(S)-lactate(in) + (S)-malate(out) = (S)-lactate(out) + (S)-malate(in)

Direction not assertedBalancedTransportRhea 79475

(R)-lactate(in) + (S)-malate(out) = (R)-lactate(out) + (S)-malate(in)

Direction not assertedBalancedTransportRhea 79479

glycolate(in) + (S)-malate(out) = glycolate(out) + (S)-malate(in)

Direction not assertedBalancedTransportRhea 79483

(S)-lactate(in) + citrate(out) = (S)-lactate(out) + citrate(in)

Direction not assertedBalancedTransportRhea 79487

(R)-lactate(in) + citrate(out) = (R)-lactate(out) + citrate(in)

Direction not assertedBalancedTransportRhea 79491

a ganglioside GD3 + acetyl-CoA = a ganglioside Ac-O-7-GD3 + CoA

Direction not assertedBalance undeterminableRhea 79495

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