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Reference

Evidence

CompoundsSubstances with curated findings
OutcomesMeasured endpoints
ProteinsTransporters and enzymes
InteractionsPairs that share biology
PapersEvery paper a finding cites
ArticlesReadings of the evidence

Chemistry

ReactionsRhea and Human-GEM, by subsystem
ReachWhat a compound can become

Reference layer

PathwaysReactions grouped under one name
ProcessesWhat proteins are annotated as doing
AnatomyTissues, by what is expressed there
Cell typesCells, by what is expressed there
OrganismsSpecies a compound is prepared from
MaterialsSubstances that are not one molecule
AssessmentsRegulatory determinations, transcribed
DiseasesFeatures, genes, and where each sits

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Reference

Evidence

Compounds
Outcomes
Proteins
Interactions
Papers
Articles

Chemistry

Reactions
Reach

Reference layer

Pathways
Processes
Anatomy
Cell types
Organisms
Materials
Assessments
Diseases

Atlas Graph Twin Access

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Catalyst

Computational infrastructure for human biology, built on a provenance-aware knowledge graph. Findings retain their sources; research and simulation are the next layers.

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A reference for what the literature reports. Not medical advice.

© 2026 CatalystPrivacy TermsReference data under the licences listed on the attribution page.

Index

Reactions

Reactions from Rhea and Human-GEM · Reach

reactions in the graph: 31,435

By source

Rhea18,558
Human-GEM12,877

Inferred

Reference data, not a finding. Evidence key

Filter reactions by equationSource

Reactions

17,151–17,200 of 31,435, by identifier

NH4(+)(in) = NH4(+)(out)
ReversibleBalancedTransportRhea 28747
ubiquinone-8 + sn-glycerol 3-phosphate = ubiquinol-8 + dihydroxyacetone phosphate
Direction not assertedBalancedRhea 28751
a ubiquinone + sn-glycerol 3-phosphate = a ubiquinol + dihydroxyacetone phosphate
Direction not assertedBalance undeterminableRhea 28755
beta-D-ManNAcA-(1->4)-alpha-D-GlcNAc-di-trans,octa-cis-undecaprenyl diphosphate + dTDP-4-acetamido-4,6-dideoxy-alpha-D-galactose = alpha-D-FucNAc4-(1->4)-beta-D-ManNAcA-(1->4)-D-GlcNAc-undecaprenyl diphosphate + dTDP + H(+)
Direction not assertedBalancedRhea 28759
ethylnitronate + O2 = chemical entity + acetaldehyde + nitrite + H(+)
Direction not assertedBalance undeterminableRhea 28767
(2E)-hexadecenoyl-CoA = (9Z)-hexadecenoyl-CoA
Direction not assertedBalancedRhea 28771

dinoflagellate luciferin + O2 = oxidized dinoflagellate luciferin + hnu + H2O + H(+)

Direction not assertedBalance undeterminableRhea 28775

4-hydroxy-L-threonine = glycolaldehyde + glycine

Direction not assertedBalancedRhea 28779

L-cysteinylglycine + H2O = L-cysteine + glycine

Left to rightBalancedRhea 28783

4-hydroxy-L-threonine + ATP = 4-(phosphooxy)-L-threonine + ADP + H(+)

Direction not assertedBalancedRhea 28787

5,6-dihydrothymine + NAD(+) = thymine + NADH + H(+)

Direction not assertedBalancedRhea 28791

2 a Fe(II)-siderophore + NADP(+) + H(+) = 2 a Fe(III)-siderophore + NADPH

Direction not assertedBalancedRhea 28795

L-prolinylglycine + H2O = L-proline + glycine

Direction not assertedBalancedRhea 28799

L-ascorbate 6-phosphate + H2O = 3-dehydro-L-gulonate 6-phosphate

Direction not assertedBalancedRhea 28803

glutathione + H2O = L-cysteinylglycine + L-glutamate

Left to rightBalancedRhea 28807

2,3-dioxo-L-gulonate(in) + Na(+)(in) = 2,3-dioxo-L-gulonate(out) + Na(+)(out)

Direction not assertedBalancedTransportRhea 28811

4-hydroxybenzoate(in) + H(+)(out) = 4-hydroxybenzoate(out) + H(+)(in)

Direction not assertedBalancedTransportRhea 28815

5-dehydro-D-gluconate(in) + H(+)(in) = 5-dehydro-D-gluconate(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28819

L-galactonate(in) + H(+)(in) = L-galactonate(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28823

putrescine(in) + L-ornithine(out) = putrescine(out) + L-ornithine(in)

Direction not assertedBalancedTransportRhea 28827

D-gluconate(in) + H(+)(in) = D-gluconate(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28831

citrate(out) + succinate(in) = citrate(in) + succinate(out)

Direction not assertedBalancedTransportRhea 28835

Zn(2+)(in) + H(+)(out) = Zn(2+)(out) + H(+)(in)

Direction not assertedBalancedTransportRhea 28839

choline(in) + H(+)(in) = choline(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28843

melibiose(in) + Li(+)(in) = melibiose(out) + Li(+)(out)

Direction not assertedBalancedTransportRhea 28847

melibiose(in) + Na(+)(in) = melibiose(out) + Na(+)(out)

Direction not assertedBalancedTransportRhea 28851

melibiose(in) + H(+)(in) = melibiose(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28855

Ag(+)(in) + H(+)(in) = Ag(+)(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28859

lactose(in) + H(+)(out) = lactose(out) + H(+)(in)

Direction not assertedBalancedTransportRhea 28863

lactose(in) + H(+)(in) = lactose(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28867

D-fructuronate(in) + H(+)(in) = D-fructuronate(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28871

L-tyrosine(in) + H(+)(in) = L-tyrosine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28875

L-tryptophan(in) + H(+)(in) = L-tryptophan(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28879

L-threonine(in) + H(+)(in) = L-threonine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28883

L-serine(in) + H(+)(in) = L-serine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28887

putrescine(in) + H(+)(in) = putrescine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28891

cadaverine(in) + L-lysine(out) = cadaverine(out) + L-lysine(in)

Direction not assertedBalancedTransportRhea 28895

glycine(in) + H(+)(in) = glycine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28899

D-alanine(in) + H(+)(in) = D-alanine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28903

3-(3-hydroxyphenyl)propanoate(in) + H(+)(in) = 3-(3-hydroxyphenyl)propanoate(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28907

L-lysine(out) + H(+)(out) = L-lysine(in) + H(+)(in)

Direction not assertedBalancedTransportRhea 28911

4-aminobutanoate(in) + H(+)(in) = 4-aminobutanoate(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28915

4-aminobutanoate(in) + L-glutamate(out) = 4-aminobutanoate(out) + L-glutamate(in)

Direction not assertedBalancedTransportRhea 28919

L-phenylalanine(in) + H(+)(in) = L-phenylalanine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28923

3,4,5-trihydroxybenzoate + O2 = (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate + 2 H(+)

Direction not assertedBalancedRhea 28927

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate = 4-carboxy-2-hydroxy-cis,cis-muconate

Direction not assertedBalancedRhea 28931

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate = oxaloacetate + pyruvate

Direction not assertedBalancedRhea 28935

xanthosine(in) + H(+)(in) = xanthosine(out) + H(+)(out)

Direction not assertedBalancedTransportRhea 28939

glycine betaine(in) = glycine betaine(out)

Direction not assertedBalancedTransportRhea 28943

L-arabinose(in) + H(+)(out) = L-arabinose(out) + H(+)(in)

Direction not assertedBalancedTransportRhea 28947

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