Skip to content

Reference

Evidence

CompoundsSubstances with curated findings
OutcomesMeasured endpoints
ProteinsTransporters and enzymes
InteractionsPairs that share biology
PapersEvery paper a finding cites
ArticlesReadings of the evidence

Chemistry

ReactionsRhea and Human-GEM, by subsystem
ReachWhat a compound can become

Reference layer

PathwaysReactions grouped under one name
ProcessesWhat proteins are annotated as doing
AnatomyTissues, by what is expressed there
Cell typesCells, by what is expressed there
OrganismsSpecies a compound is prepared from
MaterialsSubstances that are not one molecule
AssessmentsRegulatory determinations, transcribed
DiseasesFeatures, genes, and where each sits

Atlas Graph Twin Access

Search the graph

Reference

Evidence

Compounds
Outcomes
Proteins
Interactions
Papers
Articles

Chemistry

Reactions
Reach

Reference layer

Pathways
Processes
Anatomy
Cell types
Organisms
Materials
Assessments
Diseases

Atlas Graph Twin Access

Loading the page.

Catalyst

Computational infrastructure for human biology, built on a provenance-aware knowledge graph. Findings retain their sources; research and simulation are the next layers.

The graph

Compounds
Outcomes
Proteins
Atlas
Interactions
Papers
Articles
Graph
Search

Reference layer

Pathways
Processes
Anatomy
Cell types
Organisms
Materials
Assessments
Diseases
Reactions
Reach

How it works

Mission
Method
Twin
How to read the evidence
Sources and licences

Build on it

Access
In your assistant
For agents
Query the graph
Bulk export

A reference for what the literature reports. Not medical advice.

© 2026 CatalystPrivacy TermsReference data under the licences listed on the attribution page.

Index

Reactions

Reactions from Rhea and Human-GEM · Reach

reactions in the graph: 31,435

By source

Rhea18,558
Human-GEM12,877

Inferred

Reference data, not a finding. Evidence key

Filter reactions by equationSourceClear

Reactions

16,701–16,750 of 18,558 reactions from Rhea

a ganglioside SM1a + 3'-phosphoadenylyl sulfate = a ganglioside SB1a + adenosine 3',5'-bisphosphate + H(+)
Direction not assertedBalance undeterminableRhea 79207
a ganglioside SM1b + 3'-phosphoadenylyl sulfate = a ganglioside SB1a + adenosine 3',5'-bisphosphate + H(+)
Direction not assertedBalance undeterminableRhea 79211
a ganglioside Fuc-GM1 + UDP-alpha-D-galactose = a ganglioside Fuc(Gal)-GM1 + UDP + H(+)
Direction not assertedBalance undeterminableRhea 79215
S-methyl-thiohydantoin-5-propanoate + H2O = hydantoin-5-propanoate + methanethiol
Direction not assertedBalancedRhea 79219
GDP-alpha-D-lincosamide + ergothioneine = ergothioneyl-alpha-D-lincosamide + GDP + 2 H(+)
Direction not assertedBalancedRhea 79223
hapalindole G + dimethylallyl diphosphate = ambiguine A + diphosphate
Direction not assertedBalancedRhea 79227

hapalindole U + dimethylallyl diphosphate + H(+) = ambiguine H + diphosphate

Direction not assertedBalancedRhea 79231

3,4-dimethoxy-L-phenylalanine = 3,4-dimethoxy-(E)-cinnamate + NH4(+)

Direction not assertedBalancedRhea 79235

(4Z,15Z)-bilirubin IXalpha C8,C12-beta-D-bisglucuronoside + H2O = (4Z,15Z)-bilirubin IXalpha C12-beta-D-glucuronoside + D-glucuronate + H(+)

Direction not assertedBalancedRhea 79239

(4Z,15Z)-bilirubin IXalpha C8,C12-beta-D-bisglucuronoside + H2O = (4Z,15Z)-bilirubin IXalpha C8-beta-D-glucuronoside + D-glucuronate + H(+)

Direction not assertedBalancedRhea 79243

(4Z,15Z)-bilirubin IXalpha C8-beta-D-glucuronoside + H2O = (4Z,15Z)-bilirubin IXalpha + D-glucuronate + H(+)

Direction not assertedBalancedRhea 79247

(4Z,15Z)-bilirubin IXalpha C12-beta-D-glucuronoside + H2O = (4Z,15Z)-bilirubin IXalpha + D-glucuronate + H(+)

Direction not assertedBalancedRhea 79251

zearalenone + H2O = hydrolyzed zearalenone + H(+)

Direction not assertedBalancedRhea 79255

hydrolyzed zearalenone + H(+) = decarboxylated hydrolyzed zearalenone + CO2

Direction not assertedBalancedRhea 79259

4-methylumbelliferone sulfate + phenol = phenyl sulfate + 4-methylumbelliferone

Direction not assertedBalancedRhea 79263

2-naphthyl sulfate + phenol = phenyl sulfate + 2-naphthol

Direction not assertedBalancedRhea 79267

(13S)-hydroperoxy-(9Z,11E,15Z)-octadecatrienoate = etherolenate + H2O

Direction not assertedBalancedRhea 79271

(13S)-hydroperoxy-(9Z,11E)-octadecadienoate = etheroleate + H2O

Direction not assertedBalancedRhea 79275

2 N-(3-carboxypropanoyl)-N-hydroxyputrescine + 2 ATP = putrebactin + 2 AMP + 2 diphosphate + 2 H(+)

Direction not assertedBalancedRhea 79279

2 N-(3-carboxypropanoyl)-N-hydroxyputrescine + ATP = pre-putrebactin + AMP + diphosphate + H(+)

Direction not assertedBalancedRhea 79283

pre-putrebactin + ATP = putrebactin + AMP + diphosphate + H(+)

Direction not assertedBalancedRhea 79287

2 N-(3-carboxypropanoyl)-N-hydroxycadaverine + 2 ATP = bisucaberin + 2 AMP + 2 diphosphate + 2 H(+)

Direction not assertedBalancedRhea 79291

2 N-(3-carboxypropanoyl)-N-hydroxycadaverine + ATP = bisucaberin B + AMP + diphosphate + H(+)

Direction not assertedBalancedRhea 79295

bisucaberin B + ATP = bisucaberin + AMP + diphosphate + H(+)

Direction not assertedBalancedRhea 79299

3-geranyl-3-[(Z)-2-isocyanoethenyl]-1H-indole = hapalindole U

Direction not assertedBalancedRhea 79303

citrate(in) + 3 H(+)(in) = citrate(out) + 3 H(+)(out)

Direction not assertedBalancedTransportRhea 79307

Fe(III)-[cytochrome c](out) = Fe(III)-[cytochrome c](in)

Direction not assertedBalance undeterminableTransportRhea 79311

(20S)-ginsenoside Rc + H2O = L-arabinofuranose + (20S)-ginsenoside Rd

Direction not assertedBalancedRhea 79315

2-phenylethanol + 2 Fe(III)-[cytochrome c] = 2-phenylacetaldehyde + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79319

octan-1-ol + 2 Fe(III)-[cytochrome c] = octanal + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79323

butan-2-ol + 2 Fe(III)-[cytochrome c] = butan-2-one + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79327

hexan-1-ol + 2 Fe(III)-[cytochrome c] = hexanal + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79331

cinnamyl alcohol + 2 Fe(III)-[cytochrome c] = cinnamaldehyde + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79335

an aldehyde + 2 Fe(III)-[cytochrome c] + H2O = a carboxylate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79339

acetaldehyde + 2 Fe(III)-[cytochrome c] + H2O = 2 Fe(II)-[cytochrome c] + acetate + 3 H(+)

Direction not assertedBalance undeterminableRhea 79343

butanal + 2 Fe(III)-[cytochrome c] + H2O = butanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79347

hexanal + 2 Fe(III)-[cytochrome c] + H2O = hexanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79351

octanal + 2 Fe(III)-[cytochrome c] + H2O = octanoate + 2 Fe(II)-[cytochrome c] + 3 H(+)

Direction not assertedBalance undeterminableRhea 79355

farnesol + 2 Fe(III)-[cytochrome c] = farnesal + 2 Fe(II)-[cytochrome c] + 2 H(+)

Direction not assertedBalance undeterminableRhea 79359

5-methyltetrahydrosarcinapterin + coenzyme M + 2 Na(+)(in) = 5,6,7,8-tetrahydrosarcinapterin + methyl-coenzyme M + 2 Na(+)(out)

Direction not assertedBalancedTransportRhea 79363

L-alpha-aminoacyl-L-arginine(out) = L-alpha-aminoacyl-L-arginine(in)

Direction not assertedBalance undeterminableTransportRhea 79367

L-arginyl-L-alpha-amino acid(out) = L-arginyl-L-alpha-amino acid(in)

Direction not assertedBalance undeterminableTransportRhea 79371

L-alpha-aminoacyl-L-histidine(out) = L-alpha-aminoacyl-L-histidine(in)

Direction not assertedBalance undeterminableTransportRhea 79375

L-histidyl-L-alpha-amino acid(out) = L-histidyl-L-alpha-amino acid(in)

Direction not assertedBalance undeterminableTransportRhea 79379

L-alpha-aminoacyl-L-lysine(out) = L-alpha-aminoacyl-L-lysine(in)

Direction not assertedBalance undeterminableTransportRhea 79383

L-lysyl-L-alpha-amino acid(out) = L-lysyl-L-alpha-amino acid(in)

Direction not assertedBalance undeterminableTransportRhea 79387

L-arginyl-glycine(out) = L-arginyl-glycine(in)

Direction not assertedBalancedTransportRhea 79391

L-histidyl-glycine(out) = L-histidyl-glycine(in)

Direction not assertedBalancedTransportRhea 79395

L-lysyl-L-alanine(out) = L-lysyl-L-alanine(in)

Direction not assertedBalancedTransportRhea 79399

L-lysyl-L-lysine(out) = L-lysyl-L-lysine(in)

Direction not assertedBalancedTransportRhea 79403

Page 335 of 372