Catalyst

Reference

Evidence

CompoundsSubstances with curated findings
OutcomesMeasured endpoints
ProteinsTransporters and enzymes
InteractionsPairs that share biology
PapersEvery paper a finding cites
ArticlesReadings of the evidence

Chemistry

ReactionsRhea and Human-GEM, by subsystem
ReachWhat a compound can become

Reference layer

PathwaysReactions grouped under one name
ProcessesWhat proteins are annotated as doing
AnatomyTissues, by what is expressed there
Cell typesCells, by what is expressed there
OrganismsSpecies a compound is prepared from
MaterialsSubstances that are not one molecule
AssessmentsRegulatory determinations, transcribed
DiseasesFeatures, genes, and where each sits

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Reference

Evidence

Compounds
Outcomes
Proteins
Interactions
Papers
Articles

Chemistry

Reactions
Reach

Reference layer

Pathways
Processes
Anatomy
Cell types
Organisms
Materials
Assessments
Diseases

Atlas Graph Twin Access

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Catalyst

Computational infrastructure for human biology, built on a provenance-aware knowledge graph. Findings retain their sources; research and simulation are the next layers.

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A reference for what the literature reports. Not medical advice.

Reaction

MAM01329c+2ferricytochrome c+5protonMAM01328c+2ferrocytochrome c+4proton

Left to right · Unbalanced · EC 7.1.1.8 · Transport

Compartment: cytosol, mitochondrial matrix, mitochondrial intermembrane space

Inferred

Reference data, not a finding. Evidence key

Catalysts and transporters

UQCRQ(transporter)&UQCR11(transporter)&MT-CYB(transporter)&UQCRH(transporter)&CYC1(transporter)&UQCRB(transporter)&UQCRC2(transporter)&UQCRC1(transporter)&UQCRFS1(transporter)&UQCR10(transporter)

Human-GEM MAR20189·2.0.1·CC BY 4.0Reference data

MAM01329c+2ferricytochrome c+5proton→MAM01328c+2ferrocytochrome c+4proton

Catalysts and transporters

MAM01329c+2ferricytochrome c+5protonMAM01328c+2ferrocytochrome c+4proton